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研究業績

荒川和晴 業績目録

Research Contributions

 Research Publications

See here for the list in PubMed.

or see here for the list in Google Scholar.

  • Tanaka Y, Ogawa T, Maruta T, Yoshida Y, Arakawa K, Ishikawa T., “Glucan synthase-like 2 is indispensable for paramylon synthesis in Euglena gracilis”, FEBS Lett, 2017, 591(10): 1360-1370. (PubMed)
  • Iwai H, Horikawa DD, Arakawa K, Tomita M, Komatsu T, Maruyama M, "Rearing and observation of immature stages of the hoverfly Microdon katsurai (Diptera, Syrphidae)", Biodiversity Dara Journal, 2016, 4:e10185. (PubMed)
  • Hashimoto T, Horikawa DD, Saito Y, Kuwahara H, Kozuka-Hata H, Shin-I T, Minakuchi Y, Ohishi K, Motoyama A, Aizu T, Enomoto A, Kondo K, Tanaka S, Hara Y, Koshikawa S, Sagara H, Miura T, Yokobori S, Miyagawa K, Suzuki Y, Kubo T, Oyama M, Kohara Y, Fujiyama A, Arakawa K, Katayama T, Toyoda A, Kunieda T, "Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein", Nat. Commun., 2016, 7:12808. (PubMed)
  • Arakawa K*, Yoshida Y, Tomita M, "Genome sequencing of a single tardigrade Hypsibius dujardini individual", Sci. Data, 2016, 3:160063. (PubMed)
  • Arakawa K*, “No evidence for extensive horizontal gene transfer from the draft genome of a tardigrade”, PNAS, 2016, 113(22):E3057. (PubMed)
  • Yoshida Y, Tomiyama T, Maruta T, Tomita M, Ishikawa T, Arakawa K*, "De novo assembly and comparative transcriptome analysis of Euglena gracilis in response to anaerobic conditions", BMC Genomics, 2016, 17(1):182. (PubMed)
  • Kono N, Nakamura H, Ito Y, Tomita M, Arakawa K*, "Evaluation of the impact of RNA preservation methods of spiders for de novo transcriptome assembly", Molecular Ecology Resources, 2016, 16(3): 662-672 (PubMed)
  • Horikawa DD, Arakawa K, "Tardigrades - Ultimate animals surviving extreme environments", SFC Journal, 2015, 15(1), 246-260. (Publisher)
  • Oshita K, Tomita M, Arakawa K, "G-Links: a gene-centric link acquisition service", F1000 Research, 2015, 3:285. (PubMed)
  • Tanaka S, Tanaka J, Miwa Y, Horikawa DD, Katayama T, Arakawa K, Toyoda A, Kubo T, Kunieda T, "Novel Mitochondria-Targeted Heat-Soluble Proteins Identified in the Anhydrobiotic Tardigrade Improve Osmotic Tolerance of Human Cells", PLoS One, 2015, 10:e0118272. (PubMed)
  • Miyamoto M, Motooka D, Gotoh K, Imai T, Yoshitake K, Goto N, Iida T, Yasunaga T, Horii T, Arakawa K, Kasahara M, Nakamura S, "Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes", BMC Genomics, 2014, 15:699. (PubMed)
  • Kono N, Arakawa K, Sato M, Yoshikawa H, Tomita M, Itaya M, "Undesigned selection for replication termination of bacterial chromosomes", J. Mol. Biol. 2014, 426(16):2918-2927. (PubMed)
  • Arakawa K*, Tomita M, "Genome Analysis Workshop: a Personal Genomics class at Keio SFC", Keio SFC Journal, 2014, 14(1):158-177. (Publisher)
  • Nakada T, Tsuchida Y, Arakawa K, Ito T and Tomita M, "Hybridization between Japanese and North American Chlamydomonas reinhardtii (Volvocales, Chlorophyceae)", Phycological Research, 2014, 62(3):232-236. (Publisher)
  • BioHackathon 2011/2012, "BioHackathon series in 2011 and 2012: penetration of ontology and Linked Data in life science domains", Journal of Biomedical Semantics, 2014, 5:5. (Publisher)
  • Arakawa K, Tomita M, "Merging Multiple Omics Datasets In Silico: Statistical Analyses and Data Interpretation", Methods Mol. Biol. 2013, 985:459-470. (PubMed)
  • Itaya H, Oshita K, Arakawa K, Tomita M, "GEMBASSY: an EMBOSS Associated Software Package for Comprehensive Genome Analyses", Source Code for Biology and Medicine, 2013, 8(1):17. (PubMed)
  • Horikawa DD, Cumbers J, Sakakibara I, Rogoff D, Leuko S, Harnoto R, Arakawa K, Katayama T, Kunieda T, Toyoda A, Fujiyama A, Rothschild LJ, "Analysis of DNA Repair and Protection in the Tardigrade Ramazzottius varieornatus and Hypsibius dujardini after Exposure to UVC Radiation", PLoS One, 2013, 8(6):e6479. (PubMed)
  • Hisano Y, Ota S, Arakawa K, Muraki M, Kono N, Oshita K, Sakuma T, Tomita M, Yamamoto T, Okada Y, Kawahara A, "Quantitative assay for TALEN activity at endogenous genomic loci", Biology Open, 2013, 2(4):363-367. (Publisher)
  • BioHackathon 2010, "The 3rd DBCLS BioHackathon: improving life science data integration with semantic Web technologies", Journal of Biomedical Semantics, 2013, 4:6. (Publisher)
  • Arakawa K, "Comparative metabolomics of anhydrobiosis in tardigrade Ramazzottius varieornatus", Journal of Japanese Society for Extremophiles, 2013, 11(2), 75-82. (Publisher)
  • Yamaguchi A, Tanaka S, Yamaguchi S, Kuwahara H, Takamura C, Ohmi S, Horikawa DD, Toyoda A, Katayama T, Arakawa K, Fujiyama A, Kubo T, Kunieda T, "Two families of novel abundant heat-soluble proteins in an anhydrobiotic tardigrade", PLoS One, 2012, 7(8):e44209. (PubMed)
  • Kono N, Arakawa K*, Tomita M, "Validation of bacterial replication termination models using simulation of genomic mutations", PLoS One, 2012, 7(4): e34526. (PubMed)
  • Arakawa K*, Tomita M, "Measures of Compositional Strand Bias Related to Replication Machinery and its Applications", Current Genomics, 2012, 13(1):4-15. (PubMed)
  • BioHackathon 2009, "The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications", Journal of Biomedical Semantics, 2011, 2:4. (PubMed)
  • Toya Y, Kono N, Arakawa K*, Tomita M, "Metabolic flux analysis and visualization", Journal of Proteome Research, 2011, 10(8):3313-3323. (PubMed)
  • Oshita K, Arakawa K*. Tomita M, "KBWS: an EMBOSS associated package for accessing bioinformatics web services", Source Code for Biology and Medicine, 2011, 6(1):8. (PubMed)
  • Kono N, Arakawa K*, Tomita M, "Comprehensive prediction of chromosome dimer resolution sites in bacterial genomes", BMC Genomics, 2011, 12(1):19. (PubMed)
  • BioHackathon2008, "The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows", Journal of Biomedical Semantics, 2010, 1:8. (PubMed)
  • Arakawa K*, Kido N, Oshita K, Tomita M, "G-language Genome Analysis Environment with REST and SOAP Web Service Interfaces", Nucleic Acids Research, 2010, 48:W700-W705. (PubMed)
  • Arakawa K*, Suzuki H, Tomita M, "Quantitative analysis of replication-related mutation and selection pressures in bacterial chromosomes and plasmids using generalised GC skew index", BMC Genomics, 2009, 10:640. (PubMed)
  • Kono N, Arakawa K*, Ogawa R, Kido N, Oshita K, Ikegami K, Tamaki S, Tomita M, "Pathway Projector: Web-based Zoomable Pathway Browser using KEGG Atlas and Google Maps API", PLoS One, 2009, 4(11):e7710. (PubMed)
  • Arakawa K*, Oshita K, Tomita M, "A web server for interactive and zoomable Chaos Game Representation images", Source Code for Biology and Medicine, 2009, 4:6. (PubMed)
  • Arakawa K*, Tamaki S, Kono N, Kido N, Ikegami K, Ogawa R, Tomita M, "Genome Projector: zoomable genome map with multiple views", BMC Bioinformatics, 2009, 10:31.(PubMed)
  • Arakawa K*, Suzuki H, Tomita M, "Computational Genome Analysis Using The G-language System", Genes, Genomes and Genomics, 2008, 2(1): 1-13.(PDF)
  • Ogawa Y, Arakawa K*, Kaizu K, Miyoshi F, Nakayama Y, Tomita M, "Comparative study of circadian oscillatory network models of Drosophila", Artificial Life, 2008, 14(1):29-48.(PubMed)
  • Arakawa K, Tomita M, "Selection effects on the positioning of genes and gene structures from the interplay of replication and transcription in bacterial genomes", Evolutionary Bioinformatics, 2007, 3:279-286. (PubMed)
  • Arakawa K, Tomita M, "The GC skew index: a measure of genomic compositional asymmetry and the degree of replicational selection", Evolutionary Bioinformatics, 2007, 3:145-154. (PubMed)
  • Tamaki S, Arakawa K*, Kono N, Tomita M, "Restauro-G: A Rapid Genome Re-Annotation System for Comparative Genomics", Genomics Proteomics Bioinformatics, 2007, 5(1): 53-58. (PubMed)
  • Ishii N, Nakahigashi K, Baba T, Robert M, Soga T, Kanai A, Hirasawa T, Naba M, Hirai K, Hoque A, Ho PY, Kakazu Y, Sugawara K, Igarashi A, Harada A, Masuda T, Sugiyama N, Togashi T, Hasegawa M, Takai Y, Yugi K, Arakawa K, Iwata N, Toya Y, Nakayama Y, Nishioka T, Shimizu K, Mori H, Tomita M, "Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations", Science, 2007, 316(5824): 593-597. (PubMed)
  • Sugahara J, Yachie N, Arakawa K*, Tomita M, "In Silico Screening of Archaeal tRNA-encoding Genes Having Multiple Introns with Bulge-Helix-Bulge Splicing Motifs", RNA, 2007, 13(5): 671-681. (PubMed)
  • Arakawa K, Uno R, Nakayama Y, Tomita M, "Validating the significance of genomic properties of Chi sites from the distribution of all octamers in Escherichia coli", Gene, 2007, 392(1-2):239-246. (PubMed)
  • Arakawa K, Saito R, Tomita M, "Noise-reduction filtering for accurate detection of replication termini in bacterial genomes", FEBS Letters, 2007, 581(2):253-258. (PubMed).
  • Arakawa K, Tomita M, "G-language System as a platform for large-scale analysis of high-throughput omics data", Journal of Pesticide Science, 2006, 31(3):282-288(PDF)
  • Kono N, Arakawa K*, Tomita M, "MEGU: Pathway mapping web-service based on KEGG and SVG", In Silico Biology, 2006, 6(6):621-655. (PubMed).
  • Yachie N, Arakawa K*, Tomita M, "On the Interplay of Gene Positioning and the Role of Rho- Independent Terminators in Escherichia coli", FEBS Letters, 2006, 580(30):6909-6914.(PubMed).
  • Arakawa K, Yamada Y, Shinoda K, Nakayama Y, Tomita M, "GEM System: Automatic prototyping of cell-wide metabolic pathway models from genomes", BMC Bioinformatics, 2006, 7:168 (PubMed)
  • Arakawa K, Nakayama Y, Tomita M, "GPAC: Benchmarking the sensitivity of genome informatics analysis to genome annotation completeness", In Silico Biology, 2006, 6:0006 (PubMed)
  • Arakawa K, Suzuki H, Fujishima K, Fujimoto K, Ueda S, Matsui M, Tomita M, "Comprehensive software suite for bioinformatics analysis of cDNAs", Genomics Proteomics Bioinformatics, 2005, 3(3):179-188 (PubMed)
  • Arakawa K, Kono N, Yamada Y, Mori H, and Tomita M, "KEGG-based pathway visualization tool for complex omics data", In Silico Biology, 2005, 5:0039 (PubMed)
  • Arakawa K, Mori K, Ikeda K, Matsuzaki T, Kobayashi Y, Tomita M, "G-language Genome Analysis Environment: a workbench for nucleotide sequence data mining", Bioinformatics, 2003, 19(2):305-306 (PubMed)
  • Uno R, Nakayama Y, Arakawa K, Tomita M, "The orientation bias of Chi sequences is a general tendency of G-rich oligomers",Gene, 2000, 259(1-2):207-215 (PubMed)



 Reviews and Others

  • 荒川和晴, "最強生物クマムシの御家騒動とオープンサイエンス", バイオサイエンスとインダストリー, 2017, 75(2), 150. (Publisher)
  • 荒川和晴, "G-language Systemによる生物情報データベース活用法", 計測と制御, 2014, 53(5), 419-425. (Publisher)
  • 荒川和晴, "変わりゆく研究者コミュニティと学会の群雄割拠", 実験医学, 2013, 31(6), 952. (Publisher)
  • 堀川大樹,阿部 渉.荒川和晴,会津智幸,片山俊明,國枝武和,鈴木 忠,豊田 敦, "研コミュ白書 第4回クマムシ研究者コミュニティー:市民との対話ツールとしてのクマムシ", 細胞工学, 2012, 31(11). (Web).
  • 荒川和晴, "生命活動とは何か - 生命情報科学が向うべき道", 日本バイオインフォマティクス学会ニュースレター, 2012, 25:2-3. (PDF).
  • 荒川和晴, 入江直樹, 谷上賢瑞, 中村昇太, "研コミュ白書 第3回NGS現場の会:次世代シークエンサーの現場にいる人たちの交流の場", 細胞工学, 2012, 31(9). (Web).
  • 荒川和晴, "G-language Project: バイオインフォマティクス研究のためのワークベンチ", 日本バイオインフォマティクス学会ニュースレター, 2012, 24:4-5 (PDF).
  • 八谷剛史、入江直樹、荒川和晴, "Close Up 実験法:次世代シークエンサー活用術", 実験医学, 2011, 7月号
  • Arakawa K, Yachie N, Tomita M, "Visualizing Complex Omics Information - Scientific Visualization for Genomics and Systems Biology", BIOforum Europe 2008, 6:27-29 (PDF).
  • Arakawa K, Tomita M, "Large-scale Modeling for Systems Biology", BIOforum Europe, 2006, 10:54-55 (PDF).
  • 荒川和晴, "次世代バイオインフォマティクスツールを目指して -G-language Project-", 日本バイオインフォマティクス学会ニュースレター, 2006, 12:3-4 (PDF).



 Books

  • "水の生き物(学研の図鑑LIVE)", 武田正倫 監修, 学研, 2016 (Amazon)
  • "オープンソースで学ぶバイオインフォマティクス", オープバイオ研究会編, 東京電機大学出版, 2008 (Amazon)
  • "Metabolomics - The Frontier of Systems Biology", 共著, Springer-Verlag, 2005:211-220 (Amazon)
  • "メタボローム研究の最前線", 共著, シュプリンガー・フェアラーク, 2003:191-197 (Amazon)



 Books (Translations)

  • "RとBioconductorを用いたバイオインフォマティクス", 共著, シュプリンガー・フェアラーク, 2007, ISBN 978-4-431-73464-2 (Amazon)



 Educational Tools

  • “ミクロモンスターLED内臓ズーム顕微鏡&調査キット”, 学研教育出版, 2015 (Amazon)



 Talks

  • Arakawa K, "Multi-Omics Strategy to Unveil the Molecular Mechanisms of Non-Classical Model Organisms", 13th MicRO Alliance Meeting, 2016 (11/8), Kyoto, Japan
  • Arakawa K, "No evidence for extensive horizontal gene transfer from the draft genome of a tardigrade", IIBMP 2016 (9/30), Tokyo, Japan
  • 荒川和晴, "クマムシ一匹からのマルチオミクス解析", 第一回クマムシ学研究会, 2016 (4/10), Hiyoshi, Japan
  • 荒川和晴, "Adaptation strategies of tardigrades to rapidly desiccating environments", 第89回日本細菌学会総会, 2016 (3/23), Osaka, Japan
  • 荒川和晴, "クマムシゲノムに大規模な水平伝播は存在しない", 第60回 人工知能学会 分子生物情報研究会(SIG-MBI)/第20回オープンバイオ研究会, 2016 (3/17), Kanazawa, Japan
  • 荒川和晴, "生命活動を停止してまで「乾燥」という環境変化に適応したクマムシ", BMB2015, 2015 (12/3), Kobe, Japan
  • 荒川和晴, "生命活動のサスペンド&レジューム機構から見る「生」と「死」の境界", 山田研究会「生物と非生物をつなぐ」, 2015, (11/18) Shuzenji, Japan
  • 荒川和晴, 河野暢明, 藤原正幸, 中村浩之, 伊藤雄介, 冨田勝, "クモ類の網羅的シーケンシング", 日本蜘蛛学会第47回大会, 2015 (8/23), Kyoto, Japan
  • 荒川和晴, "非古典的モデル生物遺伝子資源の活用に向けたNGS解析", NGS現場の会 第4回研究会, 2015 (7/2), Tsukuba, Japan
  • Arakawa K, Fujimoto S, Tomita M, "De novo genome sequencing of various tardigrades with ultra low input", 13th International Symposium on Tardigrada, 2015 (6/23), Modena, Italy
  • 荒川和晴, "ゲノムの配列から機能を予測する〜非モデル生物遺伝子資源の活用に向けて", 第57回人工知能学会分子生物情報研究会 (SIG-MBI)/第19回オープンバイオ研究会, 2015 (3/21), Kanazawa, Japan
  • 荒川和晴, "ゲノムの配列から機能を予測する〜非モデル生物遺伝子資源の活用に向けて", 第二回 阪大微研 x 慶應先端生命 合同研究会, 2015 (3/5), Osaka, Japan
  • 荒川和晴, "クマムシの乾燥耐性に関するマルチオミクス", 第7回Evo-Devo青年の会, 2014 (10/11), Mishima, Japan
  • 荒川和晴, "パーソナルゲノム時代のリテラシー教育 - 慶應SFCでの事例", 生命医薬情報学連合大会2014, 2014 (10/3), Sendai, Japan
  • 荒川和晴, "生命活動のサスペンド&レジューム機構", 阪大微研 x 慶應先端生命 合同研究会, 2014 (4/18), Tsuruoka, Japan
  • 荒川和晴, "クマムシにおける乾眠の早さの違いはどこからうまれるのか", 生命情報科学若手の会 第五回研究会, 2014 (2/17), Chiba, Japan
  • 荒川和晴, "生命活動はどのように始まり、そしてどのように止まるか - クマムシ乾眠機構からのアプローチ", 定量生物学の会 第六回年会, 2013 (11/24), Osaka, Japan
  • 荒川和晴, "パーソナルゲノム時代のリテラシー教育", 生命医薬情報学連合大会, 2013 (10/31), Tokyo, Japan
  • Arakawa K, "Molecular mechanisms of cryptobiosis in tardigrade Ramazzottius varieornatus - the third state between life and death", 7th AYRCOB, 2013 (9/10), Tokyo, Japan
  • Arakawa K, Ito T, Kunieda T, Horikawa D, Soga T, Tomita M, "Multi-Omics Study of Tardigrade Ramazzottius Varieornatus Reveals Dynamic Metabolic Response During Anhydrobiosis ", Plant & Animal Genome Asia 2013, 2013 (3/18), Singapore, Singapore
  • 荒川和晴, "ヨコヅナクマムシはどのようにして生と死のはざまを生きるか", 生命情報科学若手の会 第四回研究会, 2013, (3/1), Okazaki, Japan
  • 荒川和晴, "生命活動はどのように始まり、そしてどのように止まるか - ヨコヅナクマムシ乾眠機構からのアプローチ", 定量オミックスワークショップ, 2013 (1/22), Osaka, Japan
  • Arakawa K, Ito T, Kunieda T, Horikawa D, Soga T, Tomita M, "Metabolomics of tardigrade Ramazzottius varieornatus reveals dynamic metabolic response during anhydrobiosis", 第35回日本分子生物学会年会, 2012 (12/13), Fukuoka, Japan
  • Arakawa K, Ito T, Kunieda T, Horikawa D, Soga T, Tomita M, "Metabolomics of tardigrade Ramazzottius varieornatus reveals dynamic metabolic response during anhydrobiosis", JST-BBSRC Workshop on Systems Redox Regulation, 2012 (10/25), Tsuruoka, Japan
  • 荒川和晴, "生命活動とは何か ー 生命と非生命の境界線を探る", 4会合同シンポジウム「これからの生命科学を考える」, 2012 (10/16), Tokyo, Japan
  • Arakawa K, "Multi-omics study of the molecular mechanisms of extremo-tolerance in tardigrade Ramazzottius varieornatus", 日本微生物生態学会, 2012 (9/20), Toyohashi, Japan
  • Arakawa K, Ito T, Kunieda T, Horikawa D, Soga T, Tomita M, "Metabolomics of tardigrade Ramazzottius varieornatus reveals dynamic metabolic response during anhydrobiosis", 12th International Symposium on Tardigrada, 2012 (6/25), Porto, Portugal
  • 荒川和晴, "ヨコヅナクマムシ乾眠機構のメタボローム解析", 極限環境生物学会, 2012 (6/23), Tokyo, Japan
  • 荒川和晴, "《クリックちゃん》を創るためには何が必要か - G-language Projectのアプローチ", 第48回人工知能学会 分子生物情報研究会(SIG-MBI)/第15回オープンバイオ研究会, 2012 (3/24), Ishikawa, Japan
  • Arakawa K, Ito T, Kunieda T, Horikawa D, Soga T, Tomita M, "Metabolomics of tardigrade Ramazzottius varieornatus reveals dynamic metabolic response during anhydrobiosis", 第34回日本分子生物学会年会, 2011 (12/14), Yokohama, Japan
  • 荒川和晴, "ヨコヅナクマムシのマルチオミクス解析", 生命情報科学若手の会 第3回研究会, 2011 (10/16), Okazaki, Japan
  • 荒川和晴, "ヨコヅナクマムシのマルチオミクス解析", 生命情報科学若手の会 沖縄セミナー, 2011 (9/3), Okinawa, Japan
  • Arakawa K, "G-language Project: the last 10 years and beyond", BOSC, 2011 (7/16), Vienna, Austria
  • 荒川和晴, "Dashcode 3による次世代ウェブアプリケーション開発", BH10.10 統合データベース技術情報交換ワークショップ, 2010 (10/19), Shuzenji, Japan
  • 荒川和晴, "ウェブサービス統合のためのユーザインタフェース", BH10.10 統合データベース技術情報交換ワークショップ, 2010 (10/19), Shuzenji, Japan
  • 荒川和晴, "複製するメディアとしてのバクテリアゲノムの秩序", 生命情報科学若手の会第二回研究会, 2010 (10/9), Mishima, Japan
  • 荒川和晴, "ポスドク in silico 実現のために。", ライフサイエンスバー vol.2 オープンバイオ研究会 × 生命情報科学若手の会, 2010 (9/3), Tokyo, Japan
  • 荒川和晴, "複製によって形成されたバクテリアゲノム構造の解析", 日本進化学会大会, 2010 (8/3), Tokyo, Japan
  • Arakawa K, Kido N, Oshita K, Tomita M, "G-language Bookmarklet: a gateway for Semantic Web, Linked Data, and Web Services", BOSC, 2010 (7/9), Boston, USA
  • Arakawa K, Kono N, Tomita M, "バクテリアゲノム構造のバイオインフォマティクス", 第83回日本細菌学会総会, 2010, Yokohama, Japan
  • Kunieda T, Kuwahara H, Horikawa DD, Toyoda A, Katayama T, Arakawa K, Yamaguchi A, Shin-I T, Ohishi K, Motoyama A, Aizu T, Hasebe Y, Kido N, Kanehisa M, Kubo T, Kohara Y, Fujiyama A, “Genome analysis and functional proteomics of anhydrobiotic extremotolerant tardigrade, Rammazzottius cf. varieornatus”, MBSJ2009, 2009, Yokohama, Japan
  • Kunieda T, Kuwahara H, Horikawa DD, Toyoda A, Katayama T, Arakawa K, Shin-I T, Ohishi K, Motoyama A, Aizu T, Kohara Y, Fujiyama A, "The tardigrade genome of an anhydrobiotic extremotolerant species, Ramazzottius varieornatus", ISEPEP3, Tsukuba, Japan
  • Kunieda T, Kuwahara H, Horikawa DD, Toyoda A, Katayama T, Arakawa K, Shin-I T, Ohishi K, Motoyama A, Aizu T, Kohara Y, Fujiyama A, "The tardigrade genome of an anhydrobiotic extremotolerant species, Ramazzottius varieornatus", 11th International Symposium on Tardigrada, 2009, Tuebingen, Germany
  • Katayama T, Arakawa K, Hasebe Y, Kido N, Kunieda T, Toyoda A, Shin-I T, Horikawa DD, Kuwahara H, Ohishi K, Motoyama A, Aizu T, Kanehisa M, Kohara Y, Fujiyama A, "Draft genome sequence assembly and preliminary annotations of Ramazzottius varieornatus genome", 11th International Symposium on Tardigrada, 2009, Tuebingen, Germany
  • Arakawa K, Ito T, Kunieda T, Horikawa D, Soga T, Tomita M, "Comparative metabolome profiling of active and anhydrobiotic states of Tardigrade Ramazzottius varieornatus", 11th International Symposium on Tardigrada, 2009, Tuebingen, Germany
  • Arakawa K, Kido N, Oshita K, Tomita M, "Web Service Interface for G-language Genome Analysis Environment", BOSC, 2009, Stockholm, Sweden
  • 荒川和晴, 冨田勝, "仮説推論・検証型 生命情報科学のためのソフトウェアとインタフェース - G-language・GEM System・Genome Projector・E-Cell 3D -", 第一回生命情報科学若手の会, 2009, Mishima, Japan
  • Arakawa K, "E-Cell 3D: 3-Dimensional Visualization of Dynamic Cell Simulation", BOSC, 2008, Toronto, Canada
  • 荒川和晴, " G-language Genome Analysis Environment 2に向けて", 第36回人工知能学会 分子生物情報研究会(SIG-MBI)/第9回オープンバイオ研究会, 2008, Ishikawa, Japan
  • Arakawa K, Saito R, Tomita M, "Noise-reduction filtering for accurate detection of replication termini in bacterial genomes", JSBi2007, 2007, Tokyo, Japan
  • 荒川和晴, "E-Cell 3D: 細胞シミュレーションの三次元可視化", 第7回オープンバイオ研究会, 2007, Apple Store Ginza-Tokyo, Japan
  • Arakawa K, "E-Cell Simulation Environment and E-Cell 3D visualization front-end", ISMB, Vienna, Austria
  • Arakawa K, "Latest developments of the G-language Genome Analysis Environment in 2007", BOSC, Vienna, Austria
  • Arakawa K, "E-Cell 3D: 3-Dimensional Visualization Front-End for E-Cell Simulation Environment", BOSC 2007, Vienna, Austria
  • 荒川和晴, "微生物ゲノムの解析:複製開始点とtRNA予測の事例紹介(おまけつき)", かずさバイオインフォマティクスセミナー, 2007, Kazusa, Japan
  • 荒川和晴, "IABにおけるソフトウェアリソースの紹介:G-languageとE-Cell", 生物情報の相互運用性2007, 2007, Tokyo, Japan
  • 荒川和晴, "E-Cell 3Dプロジェクトの紹介", 第35回 人工知能学会 分子生物情報研究会(SIG-MBI)/第六回オープンバイオ研究会, 2007, Ishikawa, Japan
  • 荒川和晴, "細胞シミュレーションのためのソフトウェア環境", 第一回機能ゲノミクス研究会/ゲノム情報利用ワークショップ2007, 2007, Kazusa, Japan
  • 荒川和晴, "システム生物学のためのシステム", 第三回複雑ネットワーク研究会, 2006, Fujisawa, Japan
  • 荒川和晴, "E-Cell 3D: 細胞シミュレーションの新しい見方", 第三回オントロジー研究会/第四回オープンバイオ研究会, 2006, Tokyo, Japan
  • Arakawa K, "From Genome to Pathways and Simulation", The 21st Century COE Young Scientist Workshop 2006 in Shonan, 2006, Fujisawa, Japan
  • Arakawa K, "G-language Project Updates", BOSC, 2006, Fortaleza, Brazil
  • 荒川和晴, "From Genome to Pathways and Simulation", 第二回複雑ネットワーク研究会, 2006, Tokyo, Japan
  • 荒川和晴, "GPAC: アノテーション精度に対する解析手法の感受性解析", 第三回オープンバイオ研究会, 2006, Ishikawa, Japan
  • 荒川和晴, "G-language Project", 第二回オープンバイオ研究会, 2005, Yokohama, Japan
  • Arakawa K, "G-language Project in 2005", BOSC, 2005, Detroit, USA
  • 荒川和晴, "G-language Genome Analysis Environment", 第一回オープンバイオ研究会, 2005, Ishikawa, Japan
  • 荒川和晴, "G-language Genome Analysis Environment", オープンバイオBoF, 2004, Yokohama, Japan
  • Arakawa K, "GEM System: Automatic generation of dynamic cell-wide metabolic pathway model from the genome", 21COE Young Scientist Symposium, 2004, Tsuruoka, Japan
  • Arakawa K, "G-language Genome Analysis Environment", BOSC, 2004, Glasgow, UK
  • 荒川和晴, "G-language Genome Analysis Environment", 生物情報資源の構築・提供側にとっても, 利用者側にとっても嬉しい環境を求めて:GRID, Web services, 言語など, 2003, Mishima, Japan
  • Arakawa K, "Metabolomics for whole E.coli modeling", E.coli Symposium, 2003, Awaji, Japan
  • Arakawa K, "G-language genome analysis environment", E.coli Symposium, 2003, Awaji, Japan



 Invited Talks/Lectures

  • 荒川和晴, "超高機能構造タンパク質による素材産業革命に向けたクモ類網羅的シーケンシング", IIBMP 一般公開講演, 2016 (10/1), Tokyo, Japan
  • 荒川和晴, "超高機能構造タンパク質探索に向けたクモ類網羅的トランスクリプトーム解析", BioFinanceGuild 2016, 2016 (8/26), Tsuruoka, Japan
  • 荒川和晴, "クモ糸高機能発現メカニズムの解明に向けた網羅的トランスクリプトームシーケンシング", 日本蜘蛛学会48回大会 公開シンポジウム「クモ糸研究の最前線:進化・生態・機能」, 2016 (8/20), Kashiwa, Japan
  • 荒川和晴, "非モデル生物のマルチオミクス解析−クモ糸とクマムシの解析", 東京農業大学生物資源ゲノム解析センター 2016年度セミナー, 2016 (7/29), Tokyo, Japan
  • 荒川和晴, "網羅的シーケンシングによるクモ糸高機能発現メカニズムの解明", イルミナゲノムサミット2016, 2016 (6/1), Tokyo, Japan
  • 荒川和晴, "de novo トランスクリプトームアセンブリーによるクモ糸高機能発現メカニズムの解明", 海洋地球インフォマティクス 2016 −情報・データの科学技術が社会の新しい扉を拓く−, 2016 (5/11), Tokyo, Japan
  • 荒川和晴, "PacBioロングリードが可能にするクモ及びクマムシのゲノム解析", 第2回PacBio現場の会, 2016 (2/23), Tokyo, Japan
  • Arakawa K, "Design and mass production of high performance biomaterials to realize the next Industrial revolution", Illumina ELEVATE, 2016, (1/31), Siem Reap, Cambodia
  • 荒川和晴, "超高機能構造タンパク質探索に向けたクモ類網羅的トランスクリプトーム解析", Illumina iSchool プロフェッショナル Webinar, 2015 (11/27), Tokyo, Japan
  • 荒川和晴, "生命情報科学ってなんだ?", 生命情報科学若手の会第7回研究会, 2015 (10/2), Tsuruoka, Japan
  • 荒川和晴, "生物は、かくも「デザイン」されている:細胞、クマムシから宇宙まで、生命のデザインを語るトークセッション", WXD(ワイアード・バイ・デザイン)トークセッション, 2015 (5/31), Tokyo, Japan
  • 荒川和晴, "クマムシから見える生の境界線", WIRED デスフェス, 2014 (11/30), Tokyo, Japan
  • 荒川和晴, "生命活動のサスペンド&レジュームを可能にするクマムシ乾眠の分子機構 加えて個人ゲノム時代のゲノムリテラシー教育について", 東海大学 医学部 基礎医学系 分子生命科学 情報生物医学研究室セミナー, 2014 (3/7), Isehara, Japan
  • 荒川和晴, "パーソナルゲノム時代のリテラシーと教育", MEDALS創薬研究におけるバイオデータベース講習会, 2013 (12/12), Tokyo, Japan
  • 荒川和晴, "生命活動のサスペンド&レジュームを可能にするクマムシ乾眠の分子機構", JAMSTEC BIOGEOS領域セミナー, 2013 (11/27), Yokosuka, Japan
  • 荒川和晴, "De Novoの達人", NGS現場の会 第三回研究会, 2013, (9/5), Kobe, Japan
  • 荒川和晴, "ヨコヅナクマムシはどのようにして生と死のはざまを生きるか", 山口大学理学部附属生命パスウェイ解析センター講演会, 2013 (2/26), Yamaguchi, Japan
  • 荒川和晴, "生命活動はどのように始まり、そしてどのように止まるか - ヨコヅナクマムシ乾眠機構からのアプローチ", 定量オミックスワークショップ, 2013 (1/22), Osaka, Japan
  • 荒川和晴, "ヨコヅナクマムシ極限環境耐性のマルチオミクス解析", インシリコ・メガバンク研究会, 2012 (7/11), Sendai, Japan
  • 荒川和晴, "マルチオミクス解析とバイオインフォマティクスによる微生物代謝のシステムバイオロジー − 全細胞シミュレーションに向けて", 東北大学 加齢研セミナー, 2011 (10/27), Sendai, Japan
  • 荒川和晴, "全細胞シミュレーションに向けたマルチオミクス解析とモデリング環境の開発", 東北大学第25回生体生命工学研究会, 2011 (10/26), Sendai, Japan
  • 荒川和晴, "バイオインフォマティクス環境の整備: AmazonEC2クラウドの活用", 生命情報科学若手の会 沖縄セミナー, 2011, Okinawa, Japan
  • 荒川和晴, "バイオインフォマティクスの最新動向 − 全細胞シミュレーションに向けて", CAMMフォーラム, 社団法人 企業研究会, 2010, Tokyo, Japan
  • 荒川和晴, "バクテリアゲノム解析", オープンバイオ講習会, 東京大学医科学研究所, 2008, Tokyo, Japan
  • 荒川和晴, "インハウスバイオインフォマティクス環境構築コース:G-languageとPerlによるゲノム解析実習", KAST 財団法人神奈川科学技術アカデミー, 2005, Tokyo, Japan
  • 内藤泰宏, 荒川和晴, "システム生物学研究におけるXserveを利用したソフトウェア開発と実行", バイオ研究に活用するアップルソリューションセミナー, 2004, Kobe, Japan



 Posters (Selected)

  • Arakawa K, Fujimoto S, Tomita M, "De novo genome sequencing of various tardigrades with ultra low input", ISMB/ECCB 2015, 2015 (7/12), Dublin, Ireland
  • 荒川和晴, 冨田勝 "ドゥジャルダンヤマクマムシのドラフトゲノム解析", 第37回日本分子生物学会年会, 2014, (11/25), Yokohama, Japan
  • 荒川和晴, "クマムシにおける乾眠の早さの違いはどこからうまれるのか", 生命情報科学若手の会 第五回研究会, 2014 (2/17), Chiba, Japan
  • 荒川和晴, 冨田勝 "クマムシにおける乾眠の早さの違いはどこからうまれるのか", 第36回日本分子生物学会年会, 2013, (12/4), Kobe, Japan
  • 荒川和晴, "微量サンプルシーケンスで切り拓く微小な非モデル生物の分子生物学", NGS現場の会 第三回研究会, 2013, (9/4), Kobe, Japan
  • Arakawa K, Tomita M, "De novo transcriptome sequencing and assembly of tardigrade species from ultra low input mRNA-Seq", ISMB/ECCB, 2013 (7/22), Berlin, Germany
  • 荒川和晴, "ヨコヅナクマムシはどのようにして生と死のはざまを生きるか", 生命情報科学若手の会 第四回研究会, 2013, (3/1), Okazaki, Japan
  • Arakawa K, Ito T, Kunieda T, Horikawa D, Soga T, Tomita M, "Metabolomics of tardigrade Ramazzottius varieornatus reveals dynamic metabolic response during anhydrobiosis", 第35回日本分子生物学会年会, 2012 (12/13), Fukuoka, Japan
  • Arakawa K, Tomita M, "Measures of compositional strand bias related to replication machinery and its applications", The 8th 3R Symposium, 2012 (11/27), Awaji, Japan
  • Arakawa K, Ito T, Kunieda T, Horikawa D, Soga T, Tomita M, "Metabolomics of tardigrade Ramazzottius varieornatus reveals dynamic metabolic response during anhydrobiosis", FOSBE2012, 2012 (10/22), Tsuruoka, Japan
  • Arakawa K, Ito T, Kunieda T, Horikawa D, Soga T, Tomita M, "Metabolomics of tardigrade Ramazzottius varieornatus reveals dynamic metabolic response during anhydrobiosis", 生命医薬情報学連合大会, 2012 (10/15), Tokyo, Japan
  • Arakawa K, Ito T, Kunieda T, Horikawa D, Soga T, Tomita M, "Quantitative metabolomics of extremotolerant tardigrade Ramazzottius varieornatus reveals dynamic response during anhydrobiosis", ECCB, 2012 (9/10), Basel, Switzerland
  • Arakawa K, Kono N, Tomita M, "Genome Projector and Pathway Projector", The First 10 Years of UniProt Symposium, 2012 (9/8), Basel, Switzerland
  • 荒川和晴, "パーソナルゲノム時代に向けたゲノム解析の実践教育", NGS現場の会, 2012 (5/25), Osaka, Japan
  • Arakawa K, Ito T, Kunieda T, Horikawa D, Soga T, Tomita M, "Metabolomics of tardigrade Ramazzottius varieornatus reveals dynamic metabolic response during anhydrobiosis", 第34回日本分子生物学会年会, 2011 (12/14), Yokohama, Japan
  • 荒川和晴, "ヨコヅナクマムシゲノムの構造・機能アノテーションにおけるmRNA-Seqデータの活用", NGS現場の会, 2011 (5/29), 熱海, Japan
  • Arakawa K, Oshita K, Kono N, Kido N, Tomita M, "G-language System: an ecosystem of bioinformatics suites", 第33回日本分子生物学会年会, 2010 (12/10), Kobe, Japan
  • Arakawa K, Tomita M, "Quantitative analysis of replication-related mutation and selection pressures in bacterial chromosomes and plasmids using generalised GC skew index", 3R Symposium, 2010 (10/29), Toyama, Japan
  • Arakawa K, Kido N, Oshita K, Tomita M, "G-language Bookmarklet: a gateway for Semantic Web, Linked Data, and Web Services", ECCB, 2010 (9/27), Ghent, Belgium
  • Arakawa K, Kido N, Oshita K, Tomita M, "G-language Bookmarklet: a gateway for Semantic Web, Linked Data, and Web Services", ISMB, 2010 (7/12), Boston, USA
  • Arakawa K, Kido N, Oshita K, Tomita M, "G-language Bookmarklet: オンライン生命情報リソースへのお手軽ゲートウェイ", 第13回オープンバイオ研究会, 2010, Ishikawa, Japan
  • Arakawa K, Kido N, Oshita K, Tomita M, "REST/SOAP Web Service API for G-language System", GIW, 2009, Yokohama, Japan
  • Arakawa K, Ito T, Kunieda T, Horikawa D, Soga T, Tomita M, "Comparative metabolome profiling of active and anhydrobiotic states of Tardigrade Ramazzottius varieornatus", 第32回日本分子生物学会年会, 2009, Yokohama, Japan
  • 荒川和晴, 鈴木治夫, 冨田 勝, "バクテリア染色体及びプラスミドにかかる複製選択圧の定量解析", 第11回日本進化学会大会, Sapporo, Japan
  • Arakawa K, Ito T, Kunieda T, Horikawa D, Soga T, Tomita M, "Comparative metabolome profiling of active and anhydrobiotic states of Tardigrade Ramazzottius varieornatus", ISEPEP3, 2009, Tsukuba, Japan
  • Arakawa K, Tomita M, "G-language Genome Analysis Environment Version 2: Integrated workbench for computational genome sequence analysis", ISMB, 2009, Stockholm, Sweden
  • 荒川和晴, 木戸信博, 大下和希, 冨田勝, "G-language Project:BioHackathon 2009のサマリー", 第11回オープンバイオ研究会, 2009, Ishikawa, Japan
  • 荒川和晴, 冨田勝, "ゲノム解析ワークベンチG-language GAE v.2", BMB2008(第31回日本分子生物学会年会・第81回日本生化学会大会 合同大会), 2008, Kobe, Japan
  • Arakawa K, Tomita M, "G-language Genome Analysis Environment Version 2: Integrated workbench for computational genome sequence analysis", GIW2008, 2008, Gold Coast, Australia
  • Arakawa K, Tomita M, "The GC skew index: a quantitative measure of genomic compositional asymmetry", 3R Symposium 2008, 2008, Tsumagoi, Japan
  • Arakawa K, Saito R, Tomita M, "Noise-reduction filtering for accurate detection of replication-related selection in bacterial genomes", ISMB, 2008, Toronto, Canada
  • Arakawa K, Hattori R, Kouchi H, Yamada Y, Kishi A, Kobayashi Y, Tomita M, "G-language Genome Analysis Environment Version 2: Integrated workbench for computational genome sequence analysis", APBC2008, 2008, Kyoto, Japan
  • Arakawa K, Saito R, Tomita M, "Noise-reduction filtering for accurate detection of replication termini in bacterial genomes", JSBi2007, 2007, Tokyo, Japan
  • 荒川和晴, 谷内江望, 冨田勝, "E-Cell 3D: 細胞シミュレーションデータの三次元可視化", BMB2007(第30回日本分子生物学会年会・第80回日本生化学会大会合同大会), 2007, Yokohama, Japan
  • Arakawa K, Yachie N, Tomita M, "E-Cell Simulation Environment 3D: 3-dimensional visualization of cellular simulation results.", ISMB, 2007, Vienna, Austria
  • Arakawa K, Ogawa Y, Tomita M, "Database driven approach for automatic construction of dynamic cell-wide metabolic pathway models", ICSB, 2006, Yokohama, Japan
  • Arakawa K, Kono N, Tamaki S, Yoshida H, Tomita M, "GEM System version 2 for the analysis of metabolic pathways", ISMB, 2006, Fortaleza, Brazil
  • Arakawa K, Tomita M, "Rapid prototyping of cell-wide metabolic pathway models from the genome sequence", SwissProt 20 Years, 2006, Fortaleza, Brazil
  • Arakawa K, Ogawa Y, Nakayama Y, Tomita M, "Database driven approach for automatic construction of dynamic models of cell-wide metabolic pathways", IUBMB, 2006, Kyoto, Japan
  • 荒川和晴, 小川雪乃, 中山洋一, 冨田勝, "各種データベースを利用した大規模代謝シミュレーションモデルの自動生成", 第28回日本分子生物学会年会, 2005, Fukuoka, Japan
  • Arakawa K, Uno R, Nakayama Y, Tomita M, "Computational analysis of Chi orientation in Escherichia coli based on genomic nucleotide composition", 3R Symposium, 2005, Awaji, Japan
  • Arakawa K, Ogawa Y, Nakayama Y, Tomita M, "Database driven approach for automatic construction of dynamic models of cell-wide metabolic pathways", ISMB, 2005, Detroit, USA
  • 荒川和晴, 中山洋一, 冨田勝, "ゲノム情報に基づいた大規模動的代謝パスウェイモデルの自動生成", 第27回日本分子生物学会年会, 2004, Kobe, Japan
  • Arakawa K, Yamada Y, Shinoda K, Nakayama Y, Tomita M, "GEM System: Automatic generation of dynamic cell-wide metabolic pathway model from the genome", ICSB, 2004, Heidelberg, Germany
  • Arakawa K, Yamada Y, Shinoda K, Nakayama Y, Tomita M, "GEM System: Automatic generation of dynamic cell-wide metabolic pathway model from the genome", 21COE Young Scientist Symposium, 2004, Tsuruoka, Japan
  • Arakawa K, Yamada Y, Shinoda K, Nakayama Y, Tomita M, "GEM System: Automatic generation of dynamic cell-wide metabolic pathway model from the genome", ISMB, 2004, Glasgow, UK
  • 荒川和晴, 山田洋平, 駒井宏美, 篠田幸作, 中山洋一, 冨田勝, "大規模パスウェイモデルの自動生成", 第26回日本分子生物学会年会, 2003, Kobe, Japan
  • Arakawa K, Yamada Y, Komai H, Shinoda K, Nakayama Y, Tomita M, "Automatic generation of cell-wide pathway model from complete genome", GIW, 2003, Yokohama, Japan
  • Arakawa K, Nakayama Y, Tomita M, "Frequency of short palindromes decreases around Chi-sites in Escherichia coli", 3R Symposium, 2003, Awaji, Japan
  • Arakawa K, Hattori R, Yamada Y, Kobayashi Y, Kouchi H, Atsuko Kishi, Tomita M, "G-language genome analysis environment version 2", E.coli Symposium, 2003, Awaji, Japan
  • Arakawa K, Hattori R, Yamada Y, Kobayashi Y, Kouchi H, Atsuko Kishi, Tomita M, "G-language genome analysis environment version 2", CBI, 2003, Tokyo, Japan
  • Arakawa K, Yamada Y, Komai H, Shinoda K, Nakayama Y, Tomita M, "Automatic generation of cell-wide pathway model from complete genome", CBI, 2003, Tokyo, Japan
  • Arakawa K, Yamada Y, Komai H, Shinoda K, Nakayama Y, Tomita M, "Automatic generation of cell-wide pathway model from complete genome", ISMB, 2003, Brisbane, Australia
  • Arakawa K, Yamada Y, Komai H, Shinoda K, Nakayama Y, Tomita M, "Automatic generation of cell-wide pathway model from complete genome", First IECA Conference on Systems Biology of E.coli, 2003, Tsuruoka, Japan
  • Arakawa K, Mori K, Matsuzaki T, Hattori R, Yamada Y, Tomita M, "Development and Implementation of the G-language Genome Analysis Environment Version 2", RECOMB, 2003, Berlin, Germany
  • Arakawa K, Mori K, Matsuzaki T, Hattori R, Yamada Y, Tomita M, "Development and Implementation of the G-language Genome Analysis Environment Version 2", Frontier of Microbial Genome Research, 2003, Kazusa, Japan
  • Arakawa K, Mori K, Matsuzaki T, Hattori R, Yamada Y, Tomita M, "Development and Implementation of the G-language Genome Analysis Environment Version 2", Genome Informatics 13: 529-530 (2002), Universal Academy Press Inc, Tokyo (ISBN 4-946443-79-7), Tokyo, Japan
  • 荒川和晴, 森航哉, 松崎建君, 服部亮, 山田洋平, 冨田勝, "G-language Genome Analysis Environment Version 2 の設計と開発", 第25回日本分子生物学会年会, 2002, Yokohama, Japan
  • Arakawa K, Mori K, Tomita M, "G-language Genome Analysis Environment", US-JAPAN Joint Workshop on Systems Biology of Useful Microorganisms, 2002, Tsuruoka, Japan
  • Arakawa K, Mori K, Tomita M, "G-language Genome Analysis Environment", ISMB, 2002, Edmonton, Canada
  • Arakawa K, Mori K, Tomita M, "G-language Genome Analysis Environment", RECOMB, 2002, Washington D.C., U.S.A.
  • Arakawa K, Mori K, Tomita M, "G-language Genome Analysis Environment", Frontier of Microbial Genome Research, 2002, Kazusa, Japan
  • Arakawa K, Mori K, Tomita M, "G-language Genome Analysis Environment", 2nd ASM and TIGR Conference on Microbial Genomes, 2002, Las Vegas, U.S.A.
  • Arakawa K, Mori K, Tomita M, "G-language Genome Analysis Environment", Genome Informatics 12: 326-327 (2001), Universal Academy Press Inc, Tokyo (ISBN 4-946443-72-X), Tokyo, Japan
  • Arakawa K, Mori K, Tomita M, "G-language Genome Analysis Environment", 第24回日本分子生物学会年会, 2001, Yokohama, Japan
  • Arakawa K, Mori K, Uno R, Nakayama Y, Tomita M, "G-language Genome Analysis Environment", 3R Symposium, 2001, Kobe, Japan
  • Arakawa K, Mori K, Tomita M, "G-language Genome Analysis Environment", Fall Symposium at Institute for Advanced Biosciences, 2001, Tsuruoka, Japan
  • Arakawa K, Uno R, Nakayama Y, Tomita M, "Computational Analysis of the Strand Bias of the Chi Sequences and Other Oligonucleotides in Bacterial Genomes", Genome Informatics 11: 311-312 (2000), Universal Academy Press Inc, Tokyo (ISBN 4-946443-65-11), Tokyo, Japan
  • 荒川和晴, 鵜野レイナ, 中山洋一, 冨田勝, "バクテリアゲノムにおけるχ配列およびG-richオリゴ配列の方向性に関する解析", 第23回日本分子生物学会年会, 2000, Kobe, Japan



 Funding

  • Academic Year 2017-2020 KAKENHI Grant-in-Aid for Scientific Research (B), No. 17H03620, , from the Japan Society for the Promotion of Science (JSPS).
  • Academic Year 2016-2019 New Energy and Industrial Technology Development Organization (NEDO)
  • Academic Year 2016-2017 Astrobiology Center of National Institutes of Natural Sciences (NINS).
  • Academic Year 2014-2019 ImPACT from the Cabinet Office, Government of Japan
  • Academic Year 2014-2015 Grant for Basic Science Research Projects from The Sumitomo Foundation.
  • Academic Year 2010 新領域融合研究センター 融合研究シーズ探索提案(共同提案者)
  • Academic Year 2010-2013 KAKENHI Grant-in-Aid for Young Scientists (A), No.22681029, 2010, from the Japan Society for the Promotion of Science (JSPS).
  • Academic Year 2008-2009 KAKENHI Grant-in-Aid for Young Scientists (B), No.20710158, 2008, from the Japan Society for the Promotion of Science (JSPS).
  • Academic Year 2007 KAKENHI Grant-in-Aid for Young Scientists (Start-up), No.19810021, 2007, from the Japan Society for the Promotion of Science (JSPS).
  • Academic Year 2004-2006 KAKENHI Grant-in-Aid for JSPS Fellows, from the Japan Society for the Promotion of Science (JSPS).
  • Academic Year 2004 The Ryoichi Sasakawa Young Leaders Fellowship Fund.
  • Academic Year 2003 Taikichiro Mori memorial research grants.



 Media Appearance

  • Radio Nikkei RN2 2013.08.26-30
  • Futurescape, FM Yokohama 2013.08.10



 Media Recognitions

  • "Don't Get Too Caught Up With Secondary Findings" - Kazuharu Arakawa, Front Line Genomics 2017 June 17th (URL)
  • 「タウンキャンパスの未来 《座談会》地域に生きる、地域を生かす」三田評論 No.1206 (2016年12月号)(URL)
  • 「緩歩動物クマムシの単一個体のゲノムシーケンシング」Nature Japan 著者インタビュー(URL)
  • 「Wmの憂鬱、定点観測=スパイバー(2)、とうとうクモなど新資源獲得に着手した」日経バイオテクONLINE Vol.2481 (URL)
  • 「クマムシの乾眠や高機能繊維クモ糸の解析から、生物の本質へ迫る」Life Technologies NEXT no.35 May 2016 (URL)
  • 「クマムシから学ぶ生命」読売新聞 山形版 2015年5月27日朝刊30面 (URL)
  • 「クマムシは生きながら死ぬ」WIRED vol.14 2014.11.25 (URL)
  • 「ゲノム新時代 変わる医療」AERA 1月20日号2014 (URL)
  • 「【リアルの逆襲】(03) お母さんは水槽――倫理と救命のはざまで」日本経済新聞 朝刊 1月4日2014 (URL)
  • "Gene Browser with a Google Feel" Bio-IT World 2008 (March 1st) (URL)
  • 「国際オープンバイオ第8回年会ウィーンで日本の先進性を発表」日経バイオテク BTJジャーナル 2007年8月号 20(2) 5-6 (PDF)
  • "Keio University Researchers Wow ISMB Crowd With New 3D Front End for E-Cell Platform" BioInform 2007 11(30) (July 27th) (URL)
  • 「ゲノム解析で慶大生ら受賞」日経産業新聞 8月22日8面2002
  • 「ゲノム解析で新ソフト」庄内日報1月10日1面2002
  • 「ゲノム解析簡単に」日経産業新聞12月12日2001



 Awards

  • 2016.10 Oxford Journals JSBi Prize.
  • 2016.03 Open Science Award 2015 by DBCLS: 2nd place in software division (for Crick-chan).
  • 2010.12 Mashup Award 6th: Team Lab Shanghai Award (for G-language Bookmarklet).
  • 2008.10 Mashup Award 4th: Google Award (for GenomeProjector).
  • 2003.09 Chem-Bio Informatics Society Best Poster Award.
  • 2003.03 Keio University President Award (慶應義塾塾長賞).
  • 2002.08 ISMB Best Poster Award by SGI.
  • 2002.04 SFC Student Award "G-language Genome Analysis Environment".
  • 2002.03 SFC Student Award "Bioinformatics Project".